Browse of TCMCG016C28876 protein

CDS

Accession Number	TCMCG016C28876
gbkey	CDS
Protein Id	OMO50184.1
Location	join(9660..9718,9849..9988,10106..10192,10359..10446,10529..10609,14326..14403,14507..14586,14900..14978,15137..15466,18232..18466,19083..19122,19204..19352,19733..21073,21302..21479,21651..21756,23675..23762,23878..23956,25055..25350,26285..27371,27645..28013,28413..29011)
Organism	Corchorus capsularis
locus_tag	CCACVL1_30575

Protein

Length	1862aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source	AWWV01016250.1
Definition	Mediator complex, subunit Med13 [Corchorus capsularis]
Locus_tag	CCACVL1_30575

EGGNOG-MAPPER Annotation

COG_category	K
Description	Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K15164        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko04919        [VIEW IN KEGG] map04919        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0005215        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0006810        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008643        [VIEW IN EMBL-EBI] GO:0015144        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016021        [VIEW IN EMBL-EBI] GO:0022857        [VIEW IN EMBL-EBI] GO:0031224        [VIEW IN EMBL-EBI] GO:0034219        [VIEW IN EMBL-EBI] GO:0040034        [VIEW IN EMBL-EBI] GO:0044425        [VIEW IN EMBL-EBI] GO:0050789        [VIEW IN EMBL-EBI] GO:0050793        [VIEW IN EMBL-EBI] GO:0051119        [VIEW IN EMBL-EBI] GO:0051179        [VIEW IN EMBL-EBI] GO:0051234        [VIEW IN EMBL-EBI] GO:0051239        [VIEW IN EMBL-EBI] GO:0055085        [VIEW IN EMBL-EBI] GO:0065007        [VIEW IN EMBL-EBI] GO:0071702        [VIEW IN EMBL-EBI] GO:0090213        [VIEW IN EMBL-EBI] GO:2000026        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGTCATGGTTTCAGTTTCTCCCTGTGGAATCTGAGTTAAGTTCCCTGCCAGACAAAAGCATAAAAGCAGATCAGAAAGATGCTGCCACTTTGCAAGTTCTCTCATCCCACCTGCAGCTGCAAAAGGAGGGATTCCTCAGTACATGGACCAATTCCTTTGTTGGGCCTTGGGATCCATCTCAAGGTCTACATAATCCAGATGAGAAAATTAAGCTGTGGCTTTTCATCCCGGGACGTCATGTATCTGTCGTAGAGTCTGCTCAGTCTGTAGTGGCCAAGTTAAGAGTTGTTGCTTCTGGATTTTGGTTGGCTCCTGGTGATTCAGAAGAGGTTGCTGCCGCTCTTTCGCAGGCATTAAGGAATCGCATAGAAAGAGCACTTCTGGGACTATCTTACATAAGATTCGGAGATGTATTTTCAAAGTATCATCCTCCGCAAATTGAAGAATCTTTCAGGAGAGCACAGCCTACAGTTGAGTTCATCTTTGCTGCTACCGAAGAATCACTTTTTGTCCATGCCATTATATCCTCAAAGCATATCCGAGGGCTTTCAACTGGTGACATAGAGAAAGTTCTAGAGCACTCTTCTAATGATTCCAGTTATCTGCTTCCTGTGATAGTTTCCCCACATGGAATGCGTGGTAGGCTCACGGGATGTTGTCCAAATGATCTTGTCAAGCAAGTCTATTTCAGCTCTGCCAAAGTTAGGACCTCTAATGGTTTTATAGGTCTACCATATCATAAAAATCAAGGTTCTGGTTGTCAGTTGAGAGGCCAAAACTGCTATGTTAAAGTTACTATTGGTTGTTCAAAATCTGGAAGTGACAAGATATTGAATTCAAACTCCAATTACACCAGGAATTTACCCAAGCACCAATCTACTGAAGCTTCTACAGCTGGAAGGGGTGATCAGAAGGGATCACTAGATCTCTTATCAGTACATGAGAAAACATTTATCTATCCATCTGAGGCTGTACTTGTGCCGGTTTTGCAAACATCCTTTGCTAGATCCTCCATGAGAAGTGATGGCAATATAGATTCCATGGAAAGATCATGGGTTGAATTCAGTGGAATTCTCACACAGCATGGCTATAACAGCAGCAGCAATAGTAACAATAGTAGCATAAGTTCCATAAGCAGTACTTCGAGTGATAGTGTGACTACAGGAGCTCGTGACCTAGAGGCAGATGCAGATTCGTCATGCAGACAGTCTGGCCTATCTTCTAATGATCAGATGGAGATTGATTGCCTAAAACTGGGTTCCAAGCGTCCTCGAATTGGGATTACAGAGTCATATGCCATTACAGGCATCGGAAATGACCAAATTGGATCTAATTGGGATTGGGATGATGATGACAGAGGAATTGTCATGGATTTCCAATCTCTTCTCTCCGAATTTGGAGATTTTGGTGACTTCTTTGAAAATGATGTACTTCCATTTGGGGAGCCCCCAGGAACTGCAGAGTCATCAGCAATTATGTTCGCTGCTCCAGATTGTGGAGATGTAGGAAACAGTCCGGTTGGGGTAATGGATATTCCTGATCCTATGGTTATGCCTGTGGGTCTTCCTTCCTTTGATAGCTTTAGCGCACCTCCTCCAGTGGCCGTAGAGGAATGTTTGAGCAAAAGCCAAGAGGTCACAAGCAGTGCCGTGATATCTGGTCCCTCGAACCATACTCCAGCTTCTTTCACTGGTGAGTTTGATCATATAATGAAGGCTGAAGCGCTGATGACTTTTTCAGCAGAATATGGAGCTGTTGAAACTCCTGCAAGTGATTCCTCATCAATTTTCAGAAACCCATACCTCCCTAAATCTCGTAAAGTGGAGAGTTCTAATTCAAGCCCAAATATTTACATATATGGTGCAACACCACCATCTTCTCCATTTTTGGATGGATTGGATGAGAAGACTGGCATGCCTATGAGTCTTAAAGCACACTCTGCAGGGAACGATTCAAGTTCCATTCTCCAACTGAAGAAATATTACACTCATGTGGAAACCAGGAAAGATAGATGTGACAGGAGATTGCTCACCAATAATGATGGCGGTGGTACAAATGAGTTGTCAGGAACATCTCAGTTTGCTAATTTTAATTCAGTGAACACACTTAAATCTGCTGACAGGAAAATGACACAAGGCACTTTTGGTGGAGAAGATATCCATCTATCTATGAAGACTCTGTTTGCAACTGAAGTCGAATGTGCTATGTTCCAAGCTTCCATGTTGAGGATGCGGCACATACCATTATCTAGGCATACAGGAAGTTCTGTTTTAAACCAGCTTCCTGGTGACCCTAGTATTATGACAGACAATGTATCTAGCAGGTATGAGGTGAAAAAGAAAGAATCTATACCTGTCAGAATTGCTGGTGATATTGATGGAGGAATAATAGATGGGCACCTTAATGCTCCTGTTGGGGTATGGCGCTCTGTTGGAGTTCCAAAAGTTTTGAAGCCTGCAACTTCGCCGAGTATTGAAGCTAGCTCGTCCTTAACACATAATTCATTTAATGAGGAAAGTATCTTGTCTTATGGGCAAAGGAAACCACTTCAGGAGCTTCTTGACGGCATTGTGTTACTGGTCCAGCAGGCTACTTCCTTTGTTGATCTGGCTCTGGATGCAGATTGTGGTGATGGTCCTTACAGTTGGCTTGCATTACAAGAGCACTGGAGGCGAGGATTTTGTTGTGGGCCTTCCATGGTCCATGCAGGTTGTGGAGGGGCTTTGGCTTCTTGCCATTCTTTGGACATTGCTGGTGTGGAGTTAGTAGATCCACTTTCTGCTAATATTCAAGCTTCATCTGTAATCAGTTTGCTGCACTCTGACATCAAATCAGCCTTAAAATCTGCATTTGGCAGTTTGGATGGTCCTTTGTCTGTCACTGACTGGTGCAAAGGCCGTGTTCAATCAGTTGATGTTGGACCCTCTGCTGATGGATCATCTGCCGAGTCCAATATAAGTGAATTGACTGGTGCAATGGATGGAGGTAAAGTTGATGAGTCTGAGCAACAACAGTGCACCAGGCTAAGACCAACTCTATTTGTTCTTCCGTCACCAGCAATACTTGTTGGGTACCAGGATGATTGGCTTAAAACTTCGTCAAACTCTTTGCAGCATTGGGAAAAGGCTCCCCTTGAGCCATATGCTCTACCAAAACCTATAAATTATTCTGTTATATGCCCCGATATTGATCCCCTTACTTCCGCTGCTGCTGATTTCTTTCAACAGCTAGGGACTGTATATGAGACGTGCAAATTAGGAACTCATTCACCTCAGAGTTTGGGAAACCAAATGGAGATAGACTCTGGGAAGTGGTCTGCTTCTGGCTTTGTCCTACTTGATTGTCCGCAATCAATGAAGATAGAAAGCAATAATGCATCGCTCCTGGGATCAATAAGTGATTATTTTCTTTCTCTATCAAATGGTTGGGACCTGGCTTGCTATCTCAAGTCCCTTTCTAAGGCACTTAAAGCGTTGAAGCTCGGTCAATTTTTGTCTACAAACCAGAAGGAAGGGATAAGCGGCCCTTGCATGGTTATATATGTGGTTTGCCCCTTTCCTGAGCCTACTGCAGTCCTGAAAACGGTCATTGAATCTTCTATTGCTGTTGGATCAATTATTCTGCCCTCAGATAGAGAGAGGAGATCTGTACTGCACAGTCAGGTGGGAAAGGCATTAAGCAGCTCAGCAGCTTCTGATGAAGCTTCAATATCCAATATTCCGGTTGTTTCAGGGTTTAGTGTTCCTAAATTGGTACTGCAGATTGTTACAGTGGATGCCATTTTTAGGGTTACAAGCCCACCTTTTAATGAACTTGTTGTTCTTAAGGAGACTGCTTTCACTATATACAACAAAGCTCGGCGGATTTCACGAGGATCTGTGAATGATGTCCTGTCATCATCGTTTTCTAATAGATCTCATTCTGTCTTGACTCCTATGACATCTATCCCTGGAATGTGGAATTCTCGTATATCAGGATCTTCTCTACCTAGAGAGGGTGAAATTGATTCCAGCTTGAGGGCTGGTGCTTGGGACAATTCATGGCAAGCAACAAGGACAGGAGGATTAAGTTGTGATCCAAACAGAAATGGTGATATCTACTATCAAGATGAAGTTCGCTACATGTTTGAACCACTTTTTATTCTTGCAGAGTCTGGTTCTGTGGAATATGGAGTTTCACCTACGGGTTTTGGTAATTTAGCCTCTGAAACTTCAAAGACAGTTTCAGATGAAAGCAGTGGAGGTTTCATGCAGAATGCAAATTCAACTGGAAGTATTGATCCTGGCTCAGGCTCGCAGTTTGATATGTCAGAGCCTGATGCGCTTAGTTCTGGTAGCCACAAGACTCCAAGCTTACATTGCTGCTATGGGTGGACAGAAGATTGGCGATGGCTGGTATGCACATGGACGGATGCAAGGGGGGAATTGCTTGACTGCAACATATTTCCATTTGGTGGAATTAGCAGTAGACAGGACACAAAAGGTCTTCAGTGCCTTTTTGTACAAGTTCTTCAGCAAGGCTGTCAAATACTTCAGACATGTGCTTCTGATACTGGTATTATCAAGCCTAGAGACTTCGTGATCACTCGCATTGGAAATTTCTATGAGCTTGAATACCTAGAGTGGCAAAAAGCTATCTATTCAGTTGGCGGATCTGAGGTAAAAAAATGGCCTCTACAGCTGCGCAGATCTGTTCCTGATGGTATGCCTGCTAGTACAAATGGAACTTCTCTGCAGCAGCAGGAGATGAGTTTGATTCAAGAGAGAACTCTGCCTTCCTCACCTAGTCCATTATACAGCCCCCACACAAAGACTGGCTTTATGAAAGGTGGTTTAGGGCAACCTGCTGCAAGAAAGCAGCTTATGAGTGGACATACGATAGTTGATAACTCGAGGGGATTGCTTCAGTGGGTGCAGAGTATTAGTTTTGTTTCAGTTTCAGTTGACCATTCTTTACATCTAGTGCTCCAAGCAGATGGAATATCTCCTGGAACTCATGGTGTGGGTGGTATGGGCCAATCAAGCTACATAGAAGGGTTCACTCCTGTAAAATCTCTGGGTTCAGCATCTGCTTCTTACATGTTAATCCCATCACCAAGCATGCGCTTCCTACCCCCAACACCTCTTCAACTTCCAATATGTCTCACTGCTGAATCACCTCCACTCGCTCATCTTCTTCACAGCAAGGGCTCTGCAATCCCCCTTTCTACCGGTTTTGTGGTTTCAAAGGCTGTGCCTTCTATGAGGAGAGATTATAGGAATTACACAAAAGAGGAATGGCCTTCCATTCTTTCGGTTAGTCTCATTGATTATTATGGGGGTAATAATGTTAGCCAAATGAGAGGAATTGGTAAGCAGGCAGGAAGTAGTCTGAGCTCTGAAGCTAGAGATTTCGAAATTGATAACCATTTGATTTTGGAGTCTGTTGCAGCAGAGCTTCATGCTCTGTCATGGATGACAATCAGTCCAGGATACTTGGAAAGGCGAAGTGCGCTGCCGTTTCACTGTGATATGATTTTGAGGCTGAGAAGATTGCTTCATTTTGCAGAAAAAGAGCTCTCTCGACAGCCAGACAAGCCACAAGTGTAA

Protein:   MSWFQFLPVESELSSLPDKSIKADQKDAATLQVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFIPGRHVSVVESAQSVVAKLRVVASGFWLAPGDSEEVAAALSQALRNRIERALLGLSYIRFGDVFSKYHPPQIEESFRRAQPTVEFIFAATEESLFVHAIISSKHIRGLSTGDIEKVLEHSSNDSSYLLPVIVSPHGMRGRLTGCCPNDLVKQVYFSSAKVRTSNGFIGLPYHKNQGSGCQLRGQNCYVKVTIGCSKSGSDKILNSNSNYTRNLPKHQSTEASTAGRGDQKGSLDLLSVHEKTFIYPSEAVLVPVLQTSFARSSMRSDGNIDSMERSWVEFSGILTQHGYNSSSNSNNSSISSISSTSSDSVTTGARDLEADADSSCRQSGLSSNDQMEIDCLKLGSKRPRIGITESYAITGIGNDQIGSNWDWDDDDRGIVMDFQSLLSEFGDFGDFFENDVLPFGEPPGTAESSAIMFAAPDCGDVGNSPVGVMDIPDPMVMPVGLPSFDSFSAPPPVAVEECLSKSQEVTSSAVISGPSNHTPASFTGEFDHIMKAEALMTFSAEYGAVETPASDSSSIFRNPYLPKSRKVESSNSSPNIYIYGATPPSSPFLDGLDEKTGMPMSLKAHSAGNDSSSILQLKKYYTHVETRKDRCDRRLLTNNDGGGTNELSGTSQFANFNSVNTLKSADRKMTQGTFGGEDIHLSMKTLFATEVECAMFQASMLRMRHIPLSRHTGSSVLNQLPGDPSIMTDNVSSRYEVKKKESIPVRIAGDIDGGIIDGHLNAPVGVWRSVGVPKVLKPATSPSIEASSSLTHNSFNEESILSYGQRKPLQELLDGIVLLVQQATSFVDLALDADCGDGPYSWLALQEHWRRGFCCGPSMVHAGCGGALASCHSLDIAGVELVDPLSANIQASSVISLLHSDIKSALKSAFGSLDGPLSVTDWCKGRVQSVDVGPSADGSSAESNISELTGAMDGGKVDESEQQQCTRLRPTLFVLPSPAILVGYQDDWLKTSSNSLQHWEKAPLEPYALPKPINYSVICPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQSLGNQMEIDSGKWSASGFVLLDCPQSMKIESNNASLLGSISDYFLSLSNGWDLACYLKSLSKALKALKLGQFLSTNQKEGISGPCMVIYVVCPFPEPTAVLKTVIESSIAVGSIILPSDRERRSVLHSQVGKALSSSAASDEASISNIPVVSGFSVPKLVLQIVTVDAIFRVTSPPFNELVVLKETAFTIYNKARRISRGSVNDVLSSSFSNRSHSVLTPMTSIPGMWNSRISGSSLPREGEIDSSLRAGAWDNSWQATRTGGLSCDPNRNGDIYYQDEVRYMFEPLFILAESGSVEYGVSPTGFGNLASETSKTVSDESSGGFMQNANSTGSIDPGSGSQFDMSEPDALSSGSHKTPSLHCCYGWTEDWRWLVCTWTDARGELLDCNIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQTCASDTGIIKPRDFVITRIGNFYELEYLEWQKAIYSVGGSEVKKWPLQLRRSVPDGMPASTNGTSLQQQEMSLIQERTLPSSPSPLYSPHTKTGFMKGGLGQPAARKQLMSGHTIVDNSRGLLQWVQSISFVSVSVDHSLHLVLQADGISPGTHGVGGMGQSSYIEGFTPVKSLGSASASYMLIPSPSMRFLPPTPLQLPICLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPSMRRDYRNYTKEEWPSILSVSLIDYYGGNNVSQMRGIGKQAGSSLSSEARDFEIDNHLILESVAAELHALSWMTISPGYLERRSALPFHCDMILRLRRLLHFAEKELSRQPDKPQV